rs252955859 SNP Detail

Summary

• ID
  rs252955859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAATG GGTTCATCCA
  TTGAGTTTTA ACTTTCAAAA ATCATAAAGT ACCATCCTAA ATATCTGAGA TTTCTTGAAT
  TGCCTAGTGA CCTGTGGGAT GTACGTCAGA ATATTACCCA GAACTGAAGT TGTGTCCTTT
  GAACTTCAGC ATTGTAGAAC TATGAACCGT GGCTGTGTTA AAAATGATAC ATGTATTCAA
  W
  TATTTCCACA GAATTTAAAG TTTGATTTTA TAATTAGTTT TTAAATTGCA AACCTTACAA
  AAATTTTCCA AAATTTACTT AGAAGCATTT CAGAGCTCTT TTCTTTCAAA GCTGAAGTCT
  ACCTTGCCTT CAGATTCATA ATCGTTCACT CTACTTTATA ACTAACTGTG TGCGTACACA
  CAACTATTTC TTTTTCTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261448	CHEV_16_84714092	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252955859					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510735 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	293 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	512 bp downstream
Rr518521	regulatory region 518521	200 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139172	transcription start site region 139172	1987 bp downstream
Tssr139173	transcription start site region 139173	355 bp upstream
Tssr139174	transcription start site region 139174	1138 bp upstream
Tssr139175	transcription start site region 139175	1226 bp upstream
Tssr139176	transcription start site region 139176	1762 bp upstream