rs252956121 SNP Detail

Summary

• ID
  rs252956121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCGCTG CGGGGACTTT
  TGTCTTCTGC TCAAACTCTG GGGAGTGTGG ACTGAACGGG AGCCATGGAC TGAGGGCGTG
  AGCCGCGCGG GGCAGTCATG ACTTCTGCCG CGGGTAAGTG GCTGCGCTCG CGCCGGGCTG
  GGGAGTAGTC GCGGCGGGCG CCGGCGGGCT CCGGCTCCCG CTGCGTTCCC CGCGGGTGGG
  Y
  GGTGCGGGAC TGGCGCCGGT CGCCCGCGCC CGCTGTGGGG TCCCCGGGAT GCGTCCCCCA
  CCCCTGAGCC CAGGTGATGG GACGGCGTCG CGGAGCTTGC TCGGGTTCCG TGACTTAGGC
  GCTGTCGCTG CCTGTGCGCG GTGTGGGAAG CGTGGAGTCC GGTGTGGAGG AGTCAGTTAT
  TCTAAGCTAG GACAGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314853	MGP_WTSI_10_93499143	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252956121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314853	MGP_WTSI_10_93499143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	within coordinates
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	597 bp upstream
Rr402165	regulatory region 402165	382 bp downstream
Rr437370	regulatory region 437370	704 bp distal
Rr437371	regulatory region 437371	387 bp distal
Rr437372	regulatory region 437372	416 bp distal
Rr437373	regulatory region 437373	within coordinates
Tssr3327	transcription start site region 3327	23 bp downstream
Tssr95293	transcription start site region 95293	927 bp downstream
Tssr95294	transcription start site region 95294	343 bp downstream
Tssr95295	transcription start site region 95295	277 bp downstream
Tssr95296	transcription start site region 95296	548 bp upstream
Tssr98985	transcription start site region 98985	629 bp upstream
Tssr98986	transcription start site region 98986	611 bp upstream
Tssr98987	transcription start site region 98987	582 bp upstream
Tssr98988	transcription start site region 98988	325 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	599 bp upstream