rs252962798 SNP Detail

Summary

• ID
  rs252962798
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135503899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCAACAGA CCTCATTAAA TGTCCCAAAT
  CTGGCAACGG ATACTCAAGC AAGTAAGGGG GCCAGCCAGG CTCCCTGAAC CACCAAAATC
  TTACAGAAAC CCTCAGGTAG ATGCATCCCT TTAAAAGTTA CAGGCTCTAG GCAGATGCCC
  W
  GGAAGATCTG TCATGTCCAT GGGACATTAC AAGGCCAGCT TTCTCCATGG GTGAGGTCAT
  GTGGCTTAGT GACTGTGGAG CTAAATGCTT GAGGCACAAC CTAACGGTTC CTTGTTGGAA
  AGGACGGAGC GAAAccatgg cctctgcatc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319991218	CHEV_1_137472738	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252962798					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135503899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1291 bp distal
Rr419194	regulatory region 419194			505 bp distal
Rr419195	regulatory region 419195			1684 bp proximal