rs252963230 SNP Detail

Summary

• ID
  rs252963230
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117662103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGGCTA GGCTTTCTCA
  ATCCTGAAAG GATTTCTACA CCCAATGGTC ACAGGTTTCC AGACTCTCTT AGAATGTGAC
  TCAACTCTCC CATTTACACA TAACAACAGT AAATCAAAAA CCACCTCCCT GCACTAAGGC
  AATCACAATT GCTCTCCTGG ACTTTAGGAT TGTCAAGAAG CCTAGGGGAG GGGGAGGAGC
  K
  GGGGGGGGGG GAGGGAGAAG CAGTTTCAGG CCACCCGCAC ACGGTGAGGA ATGTCGCTGT
  CAAGCAAGGA AAAATGGAAA GACGAAGAGA GAAAAAAAAA ATCAGAACTT TTCAGACTCC
  ATGAGCCTTG GCCCTGCCAC TGATAAAAGT GAAGAGGAGG GAACGACTAG TTCAGCCTTG
  GAGGTACTGT CCCCAGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ
ss359390996	MGP_WTSI_3_117571372	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ
rs252963230					SNP	T	G	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359390996	MGP_WTSI_3_117571372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117662103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	46 bp proximal
Gm56798	predicted gene, 56798	563 bp upstream
Rr583874	regulatory region 583874	1160 bp distal
Rr583875	regulatory region 583875	472 bp proximal
Rr583876	regulatory region 583876	722 bp proximal
Rr583877	regulatory region 583877	736 bp proximal
Snx7	sorting nexin 7	Intron
Tssr31404	transcription start site region 31404	566 bp upstream
Tssr35382	transcription start site region 35382	451 bp downstream
Tssr35383	transcription start site region 35383	476 bp downstream