rs252964055 SNP Detail

Summary

• ID
  rs252964055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103253085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATGAGT GGCCAGGCTG
  AGGTTCCAGG TCTGTTTGCC AATGTGGCCT GGTTAGGGTC CTGGGCAATT CCTGACTTGT
  CCTAAGTCAG GGATAAATAG GTTTCTAAGC CCAGGTCTGC AGCTGACCCA AATGCCACCT
  TGGGTCTGCT AGCATAGGTT CTTAGAATCC GAGACTGGGC TCCAGATCAA CCCTAGGCCC
  Y
  AGACTGGGTC TGGCTCCATT CTCTTTCTGA CTTCCATGGA TCTGGGTCTG GGCCAGCATC
  GACCTTTGTT TGGGATTTGT CCTGAGCTGG TCCTGCAGCA CCATCCACGG TTAGTGTTCT
  TCATTGGCCT TCCAGGATGG GGGCTGTTGG AGTTGCCAGG TCTCACTCCC CAAGTCTCAG
  GCTCTTAGCT GCAGACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395230275	MGP_WTSI_15_103175089	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252964055					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395230275	MGP_WTSI_15_103175089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103253085 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404654	regulatory region 404654	1889 bp downstream
Rr510620	regulatory region 510620	1624 bp distal
Rr510622	regulatory region 510622	1049 bp distal
Tssr136772	transcription start site region 136772	84 bp upstream
Tssr136773	transcription start site region 136773	2 bp upstream
Tssr136774	transcription start site region 136774	54 bp downstream
Tssr136775	transcription start site region 136775	72 bp downstream
Tssr136776	transcription start site region 136776	116 bp downstream
Tssr136777	transcription start site region 136777	148 bp downstream