rs252966567 SNP Detail

Summary

• ID
  rs252966567
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75311860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTGATGT GTGAGATGGA GGTGGTGGTG GTGGTGGTGG
  TGGTGGTGGT GGTGGTGGTG GTGGTGGTGG AGATAGAGGA CTTCTCACAC CCCCCCCCCC
  M
  CACACACACA CCAAAAGCAT TCAAAAATAG AGCGCAAGTC GAAGGCCCTC CCTTCCCCCA
  CCCGCTCCGG GAAGTCCCGC TTCGCCCAGG TTTGGTTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss365485964	MGP_WTSI_5_75547224	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	A	C	C	A	A	A	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs252966567					SNP	A	C	C	C	A	C	C	A	A	A	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365485964	MGP_WTSI_5_75547224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75311860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15981	CpG island 15981	22 bp proximal
Cpgi15982	CpG island 15982	1602 bp proximal
Gm42802	predicted gene 42802	1856 bp downstream
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	1093 bp upstream
Rr125352	regulatory region 125352	within coordinates
Tssr46684	transcription start site region 46684	181 bp upstream
Tssr46685	transcription start site region 46685	960 bp upstream
Tssr46686	transcription start site region 46686	1075 bp upstream
Tssr46687	transcription start site region 46687	1117 bp upstream