rs252969549 SNP Detail

Summary

• ID
  rs252969549
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105285724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTCCTGA GACCCATGAT GGCTCTGTAT
  GAGCTAATGA ATCCGTGTTG GCAGCTGGTC CTACTTGCTT TGTCCCACGT GTACAACTTG
  TGAATTGGTG TTCCAATCAG GCTATTAACA CATCgggagg cgggggcgcg gggggggggg
  S
  gggggggggA CCTGCATCCG GGAGACCCAC AAAGCTTGCA GTCTCTGGAT CCCAGTAGGA
  GCTCTGCTTC CTCCAGTCAC CAGGCAGACT CTTGCTCCAT TGTTCCCTTA TCACCTCTAC
  AGCACCCACA GAGGCTCTGC ATGCATGTCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319882714	CHEV_1_107254576	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252969549					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105285724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	978 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1852 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1289 bp upstream
Rr416387	regulatory region 416387	1982 bp distal
Rr416388	regulatory region 416388	1340 bp distal
Rr416389	regulatory region 416389	1951 bp distal
Rr416390	regulatory region 416390	1419 bp distal
Rr416391	regulatory region 416391	1257 bp distal
Rr416392	regulatory region 416392	667 bp distal
Rr416393	regulatory region 416393	1025 bp proximal
Tssr8255	transcription start site region 8255	1231 bp downstream
Tssr8256	transcription start site region 8256	1213 bp downstream
Tssr8257	transcription start site region 8257	1142 bp downstream
Tssr8258	transcription start site region 8258	910 bp downstream
Tssr13126	transcription start site region 13126	1483 bp upstream
Tssr13127	transcription start site region 13127	1348 bp upstream
Tssr13128	transcription start site region 13128	1285 bp upstream
Tssr13129	transcription start site region 13129	1211 bp upstream
Tssr13130	transcription start site region 13130	1036 bp upstream