rs252976815 SNP Detail

Summary

• ID
  rs252976815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:154407385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACGCCTC CTCCCAAGTA
  AGAGCCTTTT AAGATCTCCC CAACACTGCA GCTCCAGGGG CACCACAGGG GACCTGTGTG
  CATTTGGAGG CTGTCCACCC CAAATGTGTT CTAGGACAAT CTTCCTCCCA AGTCCCAATT
  TTAGGGTCGC TCCAGAGTGG ATTGAACTGG GCAGTGGTGC AATCCCTTCA CCACTCTCTC
  Y
  ACCCTGTCCC CCAATAAGAA AAGTGCTGAT AATGACACTC GGTCAGTCCA TGGAACTGTC
  TGTCTCCAGG CTCCTCTTTT CCCTCCCTGC CTTTTTTTTC CTCCTCCTTC TCCTCCTCCT
  CTCTCTGTCG TCATTGGCAG GTCTGGGGGA TCTGGTGCGG TGGAGCTGGT GCGGGCCCCC
  CTGCGGGTGT AGACTGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404942118	MGP_WTSI_X_152058932	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252976815					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404942118	MGP_WTSI_X_152058932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:154407385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23014	CpG island 23014	218 bp distal
Cpgi23015	CpG island 23015	205 bp proximal
Gm15156	predicted gene 15156	1028 bp downstream
Ptchd1	patched domain containing 1	575 bp upstream
Ptchd1as	Ptchd1 antisense RNA	147 bp upstream
Rr694584	regulatory region 694584	1590 bp distal
Rr694585	regulatory region 694585	574 bp distal
Rr694586	regulatory region 694586	within coordinates
Rr694587	regulatory region 694587	397 bp proximal
Tssr162424	transcription start site region 162424	1724 bp downstream
Tssr162425	transcription start site region 162425	1691 bp downstream
Tssr162426	transcription start site region 162426	1578 bp downstream
Tssr164445	transcription start site region 164445	887 bp upstream
Tssr164446	transcription start site region 164446	828 bp upstream
Tssr164447	transcription start site region 164447	568 bp upstream
Tssr164448	transcription start site region 164448	285 bp upstream
Tssr164449	transcription start site region 164449	243 bp upstream