rs252987479 SNP Detail

Summary

• ID
  rs252987479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:133394285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGGGAG GGAGCCGGCA
  GGCGGCGTCT CCTTTAAAAG CCGCGAGCGC CGCGCCACGG CGCCTCCGTC GTCGCCGCCG
  GAGTCCTCGC CCTGCCGCGC AGAGCCCTGC TCGCACTGCG CCCGCCGCCG CTGCGCTTCC
  CACAGCCCGC CCGGGATTGG CAGCCCCGGA CGTAGCCTCC CCAGGCGACA CCAGGCACCG
  R
  ACGCCCTCCC GGCGAAAGAC GCGAGGGTCA CCCGCGGCTT CGAGGGACTG GCACGACACG
  GGTTGGAACT CCAGACTGTG CGCGCCTGGC GCTGTGGCCT CGGCTGTCCG GGAGAAGCTA
  GAGTCGCGGA CCGACGCTAA GAACCGGGAG TCCGGAGCAC AGTCTTACCC TCAATGCGGG
  GCCACTCTGA CCCAGGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355733543	MGP_WTSI_2_133378101	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252987479					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355733543	MGP_WTSI_2_133378101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133394285 () rs orientation: forward

Symbol	Name	Function Class
Bmp2	bone morphogenetic protein 2	mRNA-UTR
Cpgi12316	CpG island 12316	within coordinates
Cpgi12317	CpG island 12317	1883 bp proximal
Rr366783	regulatory region 366783	within coordinates
Rr565619	regulatory region 565619	1566 bp distal
Rr565621	regulatory region 565621	196 bp distal
Rr565622	regulatory region 565622	within coordinates
Rr565623	regulatory region 565623	169 bp distal
Rr565624	regulatory region 565624	942 bp proximal
Tssr20347	transcription start site region 20347	128 bp downstream
Tssr20348	transcription start site region 20348	87 bp downstream
Tssr20349	transcription start site region 20349	639 bp upstream