rs252989316 SNP Detail

Summary

• ID
  rs252989316
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44509813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTTCTT TAATTCTTTC
  CTTTCCCCCT ATCTTTCCTT TCCCTTTTCT ACCTTCTTTA ATTTTTTCTT GTCCTTCTCC
  ACTCTTTTCC CCCCTTCTTT CTCAGTTTCA CTCTTCGTTT TTCTCTTCTC TTTCCTCACC
  TGGCTCTCTC CCCCGTTTCT CTCTCTCTCT CTCTCTCTCT CTCTCCATTT TTCTTCTTGG
  M
  GTCTCCTCTT ATTTCTCCTA TCTGGTTCTT TACTCTCTCC TCTCTCCACT TCTTAGCCTT
  CAGTTTTTCT CAGTCTGCCT GTAGAATAGT GATTTCCAAC TTTAATTTTC ACATCTCCTA
  AAAGCCACCC TCATCCACTG TCACCTTGGC CTTCCCCAGT CCCTCTCCCA CTCTCCAGAT
  CCTACACTGA GTGATTTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201283	MGP_WTSI_11_44432488	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252989316					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201283	MGP_WTSI_11_44432488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44509813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	1683 bp distal
Cpgi2763	CpG island 2763	357 bp distal
Cpgi2764	CpG island 2764	786 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	495 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1970 bp upstream
Rr369170	regulatory region 369170	1673 bp downstream
Rr445653	regulatory region 445653	1659 bp distal
Rr445654	regulatory region 445654	270 bp distal
Tssr3469	transcription start site region 3469	1831 bp upstream
Tssr101029	transcription start site region 101029	1684 bp downstream
Tssr101030	transcription start site region 101030	1650 bp downstream
Tssr101031	transcription start site region 101031	1625 bp downstream
Tssr101032	transcription start site region 101032	1589 bp downstream
Tssr101033	transcription start site region 101033	1473 bp downstream
Tssr101034	transcription start site region 101034	1443 bp downstream
Tssr101035	transcription start site region 101035	1428 bp downstream
Tssr101036	transcription start site region 101036	1356 bp downstream
Tssr101037	transcription start site region 101037	1326 bp downstream
Tssr101038	transcription start site region 101038	1283 bp downstream
Tssr101039	transcription start site region 101039	1099 bp downstream
Tssr101040	transcription start site region 101040	1051 bp downstream
Tssr101041	transcription start site region 101041	851 bp downstream
Tssr101042	transcription start site region 101042	782 bp downstream
Tssr101043	transcription start site region 101043	763 bp downstream
Tssr101044	transcription start site region 101044	395 bp downstream
Tssr107570	transcription start site region 107570	917 bp upstream