rs252990745 SNP Detail

Summary

• ID
  rs252990745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74818348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCAACAG ATACTTACAA
  AAAAAAAGCT GTTTGCTACT CAGTGGAGCT TGGAGAGTGG TTTATAAAGT CCTCTCCTCC
  TCCTCCTCTT CCTCTTTTCC TTTGTTGAGA CAGAGTCTCA TATAGTCCAA GTAAGCTTCA
  AACTCTGTGG CCTTGAACTC TTGATCTTGC TGTCACTCCC CAAGTGCTGG GATTTGGAGG
  Y
  ATGGATTTGG CTGGGCTCTA CTGTTCTTGA GTCCTTTGGT CCTTTGAGAG CGTGTCACAA
  TTCGCCCATT GGTGCCTAGG AAAAGCTCCT CTAGTGGAAC TTTTTTTTTT CTTCTTATAT
  TCTATCATCA TAGTAGCAGT TAGTCTCAGT ATTCTAATGA CATAGTCTAG GCAGTATTTT
  CATGAAATGA TTCTGTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890625	MGP_WTSI_11_74741024	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252990745					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890625	MGP_WTSI_11_74741024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74818348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	1078 bp distal
Gm72316	predicted gene, 72316	1166 bp downstream
Rr451010	regulatory region 451010	1760 bp distal
Rr451011	regulatory region 451011	1689 bp distal
Rr451012	regulatory region 451012	1413 bp distal
Rr451013	regulatory region 451013	1493 bp distal
Rr451014	regulatory region 451014	452 bp distal
Rr451015	regulatory region 451015	508 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	1574 bp upstream
Tssr102917	transcription start site region 102917	1689 bp downstream
Tssr102918	transcription start site region 102918	1655 bp downstream
Tssr102919	transcription start site region 102919	1613 bp downstream
Tssr102920	transcription start site region 102920	1389 bp downstream
Tssr102921	transcription start site region 102921	635 bp downstream
Tssr102922	transcription start site region 102922	170 bp upstream
Tssr102923	transcription start site region 102923	190 bp upstream
Tssr102924	transcription start site region 102924	204 bp upstream
Tssr109155	transcription start site region 109155	1806 bp upstream
Tssr109156	transcription start site region 109156	1537 bp upstream
Tssr109157	transcription start site region 109157	within coordinates