rs252993622 SNP Detail

Summary

• ID
  rs252993622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67377040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTTCTC CAGGCCCCAG
  AGGCCCTCTG TCCGAGCTGC CAACACTACC ACCCTTCCCT GTTCCTCCCC ATGATCCCGT
  GATCTGGGCA AAGGACCTTG ATGGAGCCCA GCTCTGTCCC ACCTTCTCAC GGACGGCCTT
  CCGAAAACTT AGGCCATTTG AAGGGAGTTG ACTGTCACTC CAAGAAATGG GGGAGCAAAA
  R
  GAGGGCTGGG TGAGGGCCCC TGGCCTACAG GGCTGCGCTC TGACCCTGAC TGAGAGATGT
  CTGACTATGG TCTGCTAGCC CTTTCCGTTG ACCCTGGATG CCAGTTGTTC TGAGACTTTT
  TCTACAATAG GTTGGGAGTT GCTGATTCCT TTGATCGAGG ACAGCGGAAA AGACTAAATT
  AAAGCAAAAC TGATGTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380736065	MGP_WTSI_10_67003958	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252993622					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380736065	MGP_WTSI_10_67003958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67377040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1670	CpG island 1670	1991 bp distal
Egr2	early growth response 2	within coordinates
Rr433078	regulatory region 433078	1669 bp distal
Tssr93840	transcription start site region 93840	1947 bp downstream
Tssr93841	transcription start site region 93841	1401 bp downstream
Tssr93842	transcription start site region 93842	1332 bp downstream
Tssr93843	transcription start site region 93843	1258 bp downstream
Tssr93844	transcription start site region 93844	1209 bp downstream
Tssr93845	transcription start site region 93845	1169 bp downstream
Tssr93846	transcription start site region 93846	1121 bp downstream
Tssr93847	transcription start site region 93847	459 bp downstream
Tssr97954	transcription start site region 97954	1037 bp upstream