rs252999678 SNP Detail

Summary

• ID
  rs252999678
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCAAA ATAAATAAAT
  AAATATATAT ATTTTTTTAA ACCTAGAAAC AAGATAGAGA GATGGCTAAC TGGCTAAGAG
  TGGTGCACCC ACCCACCCTG TCCCCTTTGT CTTTCTATGT AGCGCTGGCT GTCCTGTAAG
  TCTGTATGTA GACTAGGCAG GCCTTGAATT CAGAGATTCT TCTAGCTCTG CATCCCAAAC
  G
  CTGGAATTAA GGAATAAAAG AACCAAGTAC TGTTTGTTCT TCCAGGAGAC CCCAGTTTCC
  CTCCCAGTAC CCACTTTGAT CAGCTTACAA CTATAACCCC ACTACGGGTG AATGAACATT
  TTCTGGCCTC CATGGGTACT CATGTACATG TATGCACATA TGCACACATA TAAATAAAAT
  AAAATATGTT TTTATAATTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	JF1/MsJ	KK/HlJ	LG/J	SM/J
ss382237238	MGP_WTSI_11_3072915	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57L/J	JF1/MsJ	KK/HlJ	LG/J	SM/J
rs252999678					SNP	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237238	MGP_WTSI_11_3072915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	331 bp distal
Cpgi2458	CpG island 2458	352 bp proximal
Rr441481	regulatory region 441481	462 bp distal
Rr441482	regulatory region 441482	1630 bp distal
Rr441483	regulatory region 441483	696 bp distal
Rr441484	regulatory region 441484	within coordinates
Rr441485	regulatory region 441485	279 bp proximal
Rr441486	regulatory region 441486	1061 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	115 bp upstream
Tssr106449	transcription start site region 106449	407 bp downstream