rs252999797 SNP Detail

Summary

• ID
  rs252999797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40083440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACG AGAGAACATA TCACTGCCAT
  K
  TCACTACAGT AATTTTCTAA CTGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322624637	CHEV_8_40715753	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252999797					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40083440 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1142 bp upstream
Tssr81027	transcription start site region 81027	1044 bp upstream
Tssr81028	transcription start site region 81028	990 bp upstream
Tssr81029	transcription start site region 81029	866 bp upstream
Tssr81030	transcription start site region 81030	749 bp upstream
Tssr81031	transcription start site region 81031	53 bp upstream
Tssr81032	transcription start site region 81032	798 bp downstream
Tssr81033	transcription start site region 81033	908 bp downstream
Tssr81034	transcription start site region 81034	933 bp downstream