rs253001169 SNP Detail

Summary

• ID
  rs253001169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100976861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCCGCC TCCCCTGCCG
  TCGGAGCGGG AAGTTGCGCT GGGCTTGGAG GCCGGCCTGG AGGCGGGGAG ACTGGGGAGG
  CCGGGCGGGC GCCGAGGCCA GGACTGAGCT CCTGGCTGCC CTGAGTGGCC GCTGGCTGTG
  AGCCGCTTCC TGGGTCGAAG GGCAAAGGGG AAGGCGGCTG GCCAGACCCG CCCCGTCCGC
  Y
  GCCTGGCCAA GACCACCTCT CCTAGGACGC CTGTGGACTC TGGCCTACGT CCCCGCCCTG
  GGCGCGCAGA GCAACTACAG CGTGCAGGAT GCCCCTGGCA GGGTGCATAG CCAGATGAGG
  GCACTGTCTC TGCACAGGTG CCACAGAACA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC
  GCGCACGCGC GCACTATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395190035	MGP_WTSI_15_100909411	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253001169					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395190035	MGP_WTSI_15_100909411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100976861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	within coordinates
Fignl2	fidgetin-like 2	413 bp upstream
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	within coordinates
Rr509898	regulatory region 509898	1092 bp distal
Rr509899	regulatory region 509899	424 bp distal
Rr509900	regulatory region 509900	within coordinates
Rr509901	regulatory region 509901	107 bp proximal
Tssr133183	transcription start site region 133183	1060 bp downstream
Tssr136514	transcription start site region 136514	600 bp upstream
Tssr136515	transcription start site region 136515	561 bp upstream
Tssr136516	transcription start site region 136516	467 bp upstream
Tssr136517	transcription start site region 136517	150 bp upstream
Tssr136518	transcription start site region 136518	48 bp upstream