rs253002056 SNP Detail

Summary

• ID
  rs253002056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATTGCT GGACAAGGAA
  GTTTTCCATG TAATAGTTTC TGAAAAACAG GTTTGGGGAA GGCCTGGACT TTGAAACAGG
  TCCAACTTCT GTGGCTGTCA TTCCTGGAAT ATGAATACAC TGAGTGCTTA AAACTGAAAA
  TCAAAGCTTC TCCTAATATA TTTGTGCTAA AATGCAATGC CCTCAATTGT TAACAGGGCA
  Y
  GATGCATTAA TTTTATAAAT CAGTGGTTGT TTGTAGAGCT GGAAGCCTTG TGACCTTGTG
  TTAGCTACTT TTTACATGAT TGGTGAAGGA GGAGAAAAAT GGCCTCCCAA TGCAGGATAC
  TCTAGCACCC TACCTCTTAG ACAAGTAGAT TTGGGCTTGG CTTAAATTTT TTTCTCTGCA
  CTAATACCGA GCCGTAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401720053	MGP_WTSI_19_10058325	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253002056					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720053	MGP_WTSI_19_10058325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961199 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	1339 bp downstream
Cpgi10595	CpG island 10595	450 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1315 bp upstream
Rr543964	regulatory region 543964	1328 bp distal
Rr543965	regulatory region 543965	1102 bp distal
Rr543966	regulatory region 543966	within coordinates
Rr543967	regulatory region 543967	496 bp proximal
Tssr155003	transcription start site region 155003	1124 bp downstream
Tssr155004	transcription start site region 155004	983 bp downstream
Tssr155005	transcription start site region 155005	717 bp downstream
Tssr155006	transcription start site region 155006	343 bp upstream
Tssr155007	transcription start site region 155007	412 bp upstream
Tssr155008	transcription start site region 155008	722 bp upstream
Tssr155009	transcription start site region 155009	1068 bp upstream
Tssr155010	transcription start site region 155010	1258 bp upstream
Tssr158131	transcription start site region 158131	1400 bp upstream
Tssr158132	transcription start site region 158132	1386 bp upstream
Tssr158133	transcription start site region 158133	1329 bp upstream
Tssr158134	transcription start site region 158134	1304 bp upstream
Tssr158135	transcription start site region 158135	1268 bp upstream
Tssr158136	transcription start site region 158136	895 bp upstream
Tssr158137	transcription start site region 158137	384 bp downstream
Tssr158138	transcription start site region 158138	430 bp downstream
Tssr158139	transcription start site region 158139	750 bp downstream
Tssr158140	transcription start site region 158140	971 bp downstream
Tssr158141	transcription start site region 158141	1022 bp downstream
Tssr158142	transcription start site region 158142	1038 bp downstream
Tssr158143	transcription start site region 158143	1097 bp downstream
Tssr158144	transcription start site region 158144	1254 bp downstream