rs253002629 SNP Detail

Summary

• ID
  rs253002629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98853514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGACTA CCTCTAACAT
  GTAAGTATAT CAGCAAGAAC AAGAACTAAA TGGTGTCAGC GCTCTCTCAG AGAAGGCCAC
  ACCCATGTGC TCCGATATTG TTCTGATCAC TTCTCTCTTA ACTCTTATGT TTAGAATTGA
  TAGTAATGAA TAAATCCCAA CTGTGCTTCA TTAAAAAAAA AAAAAATTAA ACAGCGGAGA
  R
  AACATAAGGA TTGACAAATA GCTTGTTGAA AAGATCGTCA CAATTAAAAA CTATTTCATT
  TGTGCATGTA TTGTGCAGGT GTGCATGTGT ATTTGAGGGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTATGTGTGT GTGTGTTTGT CTTTGGAGGC CAGAGGACAA CTACAGGAGC
  AGATTCTCTT CTTTCACCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395146374	MGP_WTSI_15_98786064	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253002629					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146374	MGP_WTSI_15_98786064	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98853514 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	within coordinates
Cpgi7685	CpG island 7685	1917 bp distal
Gm56698	predicted gene, 56698	within coordinates
Rr404613	regulatory region 404613	1862 bp downstream
Rr509238	regulatory region 509238	1973 bp distal
Rr509239	regulatory region 509239	1440 bp distal
Rr509240	regulatory region 509240	within coordinates
Tssr132971	transcription start site region 132971	1864 bp downstream
Tssr136339	transcription start site region 136339	1974 bp upstream
Tssr136340	transcription start site region 136340	1957 bp upstream
Tssr136341	transcription start site region 136341	1934 bp upstream
Tssr136342	transcription start site region 136342	147 bp upstream
Tssr136343	transcription start site region 136343	1514 bp downstream