rs253004117 SNP Detail

Summary

• ID
  rs253004117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125951567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCTCCGA GTTTGAAGCC
  AGCCTGGTCT ACAGAGCAAG TTCCAGGACA GCCAGGACAA CACAGAGAAA CCCTGTTTCA
  AAACAAAACA AAAAGGTTCA AGTTGTACTA GACAATTTTA AAAAGTTTGG CTCTTGGGAG
  GAAAGAAAAA CGACTAGAAG GTGTGACGTG GAGGATGCCA CAAGCAGGAA GGAAGACATT
  R
  AAGGAATGAG CTGTGTTTTG TAAGCGGCGC CTTTTGAAAT TTAGTCCAAC AGCATCAGAG
  CAGTGACACA GAGGAACGTA GGAATGCAGA AAGGGGAATT AAGGAATGCG AGGATTCTAC
  AAGGAAAAGG AGGAAGTGGC TGATTATTAA AGGAGGTGGA TGTAGGTTCC AAAGCTCAAG
  TCTCAAGATT GCTGTGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363147581	MGP_WTSI_4_125735018	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253004117					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363147581	MGP_WTSI_4_125735018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125951567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14805	CpG island 14805	275 bp proximal
Gm68683	predicted gene, 68683	within coordinates
Oscp1	organic solute carrier partner 1	791 bp upstream
Rr85182	regulatory region 85182	367 bp distal
Rr99993	regulatory region 99993	within coordinates
Rr398485	regulatory region 398485	618 bp upstream
Tssr1297	transcription start site region 1297	856 bp upstream
Tssr38971	transcription start site region 38971	176 bp upstream
Tssr38972	transcription start site region 38972	783 bp upstream
Tssr38973	transcription start site region 38973	841 bp upstream
Tssr38974	transcription start site region 38974	877 bp upstream
Tssr43347	transcription start site region 43347	634 bp downstream