rs253012893 SNP Detail

Summary

• ID
  rs253012893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119185152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCCTGCCTCC AGAATGCATT
  Y
  CTCCATTCTT TACACTGGGC ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219008	CHEV_9_119265204	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253012893					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119185152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22473	CpG island 22473	1257 bp proximal
Rr688472	regulatory region 688472	within coordinates
Rr688473	regulatory region 688473	1091 bp proximal
Rr688474	regulatory region 688474	1306 bp proximal
Rr688475	regulatory region 688475	1396 bp proximal
Tssr87678	transcription start site region 87678	1457 bp upstream
Tssr87679	transcription start site region 87679	1488 bp upstream
Xylb	xylulokinase homolog (H. influenzae)	1295 bp upstream