AAATA AATAAATACA TATATACATA Y ATATATACAT TATATATAGC CACTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C58/J |
CZECHII/EiJ |
JF1/MsJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RF/J |
SPRET/EiJ |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss920542346 | MGP_WTSI_10_93897883 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | C | C | C | C | T | C | C | T | T | T | C | C | C | T | T | T | T | T | C | T | C |
SNP Consensus Information | ||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C58/J |
CZECHII/EiJ |
JF1/MsJ |
LEWES/EiJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RF/J |
SPRET/EiJ |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs253019590 | SNP | T | T | C | C | C | C | T | C | C | T | T | T | C | C | C | T | T | T | T | T | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss920542346 | MGP_WTSI_10_93897883 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr10:93733745 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
4930471D02Rik | RIKEN cDNA 4930471D02 gene | within coordinates | ||||||
Metap2 | methionine aminopeptidase 2 | 793 bp upstream | ||||||
Rr437346 | regulatory region 437346 | 972 bp distal | ||||||
Rr437347 | regulatory region 437347 | 438 bp distal | ||||||
Rr437348 | regulatory region 437348 | 1450 bp proximal | ||||||
Tssr95291 | transcription start site region 95291 | 722 bp downstream | ||||||
Tssr95292 | transcription start site region 95292 | 708 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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