rs253020379 SNP Detail

Summary

• ID
  rs253020379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152462114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACGGAC GGGGCCCTCC
  CCCATCAAGC TCTTGTTCAG AAAATGCCTG CAGGTTTGCC TTCATTCTGA ATGTATAGAG
  GCATTTTTCT CAATTGAGGC TCCCTCCTCT CAGACAACTC TAGCTTGTGT CAAGCTGACA
  TGAAACTATT CAACACAGTC AGCCGCTGAG AAAAGCATGG AAATGCTTTG TACTACTCCT
  R
  AGGATTTCCA GTGATACAAC TGTTTTGAGA AGGTGGCCAG GGCACGTACG CCTTTTGCTC
  AGTTGCAATG ACACCACAGT GATTTGTATC ACTGGGCCCT TTCAAAGATG TTGAGCCACC
  TTCTGTGACC CTGCATCCTC CACCAGCCAC CCCATTATAG GCTGTGGTGA TTTCCACTTG
  ACAGCAGAGA AACCTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562578	CHEV_2_152445930	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253020379					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152462114 () rs orientation: forward

Symbol	Name	Function Class
Rr567404	regulatory region 567404	545 bp proximal
Tssr26844	transcription start site region 26844	1921 bp downstream
Tssr26845	transcription start site region 26845	1931 bp downstream