rs253022178 SNP Detail

Summary

• ID
  rs253022178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116485581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAATCC TGTACTTAAA
  ACACTTTAAA TATTTTAGCT GTCTCTCTTT TTTTTTCTTT CATATATATT AGGTAGGGAC
  TTACAGTCTA TCCCTGGCTA GCCTGAAACT TGCTATTTAG ACCCACTGAT CTCTAACCCA
  CAGACATCTG CCTGCCTGTG ATTGCGAGGG CTGGGATTAC AGGTGAGCAG CACCACACAC
  R
  CCTTCTTTTA CAACCTTTTG TAACTCCAGT TCAAGGGCAT TCAATCAATG CCTTCCTGTG
  ACCACCAGAG CCACTAGGCA CACACATGGT ACACATTTAT GTATGCAGAT ACACTCATAC
  ACATTAAATA AAAGTAAATG TGGCTGGAAA ATTCGCTAGG AGGTTAGGAG CACTTGTTAT
  TCTTGCAAAG GATCCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277624	CHEV_4_116300989	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253022178					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116485581 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	870 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	443 bp upstream
Rr84401	regulatory region 84401	420 bp proximal
Rr84402	regulatory region 84402	1420 bp proximal
Rr84403	regulatory region 84403	1820 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	1384 bp downstream
Rr398404	regulatory region 398404	689 bp downstream
Rr398405	regulatory region 398405	220 bp downstream
Tssr42894	transcription start site region 42894	987 bp upstream
Tssr42895	transcription start site region 42895	881 bp upstream
Tssr42896	transcription start site region 42896	476 bp upstream
Tssr42897	transcription start site region 42897	428 bp upstream
Tssr42898	transcription start site region 42898	396 bp upstream