rs253022556 SNP Detail

Summary

• ID
  rs253022556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:30674796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCAGT GGCAGCAACA
  AGCTGAGAGA GCCGCCACCC CTCAAGTATA GGACCCACTC CTTGTGTCAT ATGCTAGATT
  CTCTGCCTAG AACACAAGCT TTCACATAGG CTAATTGAGT AGGCACCCCA GGGAACTATG
  GGACATTTGT GCTAAGAGTG AGAGTTTAGC TATAACAATA ACCCTTCATT TTGAACAGTA
  R
  TTTGCACTTC AGGAAACATT TATATATGTG TTTGTTGAAG GAGTGGGTAC ATGGTCTTTG
  AGATGCTTGA GAGCAGTATA GTAGATTGTA AAGGGTTTTA TTTTTAATGG GAAGGGCATC
  CTATGTGGAG GACCAATGAT GCTTTAACTT TATTGGGTCA TGAGTATCTA ATGTGTCCCA
  TACACCTATT CAGTTCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390693778	MGP_WTSI_14_31766025	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253022556					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390693778	MGP_WTSI_14_31766025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30674796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6278	CpG island 6278			892 bp distal
Gm41121	predicted gene, 41121			1556 bp upstream
Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr404045	regulatory region 404045			1365 bp downstream
Rr489933	regulatory region 489933			1567 bp distal
Rr489934	regulatory region 489934			1452 bp distal
Rr489935	regulatory region 489935			1351 bp distal
Rr489936	regulatory region 489936			626 bp distal
Tssr124896	transcription start site region 124896			1424 bp downstream
Tssr124897	transcription start site region 124897			1389 bp downstream
Tssr124898	transcription start site region 124898			1370 bp downstream
Tssr124899	transcription start site region 124899			1329 bp downstream
Tssr124900	transcription start site region 124900			1297 bp downstream
Tssr127906	transcription start site region 127906			1550 bp upstream