rs253022905 SNP Detail

Summary

• ID
  rs253022905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100976548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGCTGC GGCCGCCGCG
  GCCGGGAGCG GGACTGGGCA GTGGGGGTGG CCGGACAAGG GGCGGCCCAG GCTCCCCCCG
  CAGGCAGGAC CCCCACCCCG CCTCCCCTCG CCCGCCCCCA GCGCCCTCCC TCCGGGCCCG
  CGCCCCGCCC CTCCCAGCGC CCCGCCCCCG CCCCGCTCGC CCGGCCCCTC GCGGCAGCCT
  Y
  GCCGCCCCGC CTCTCCCTCC CCGGGCTCGA AAATAAATTA GCCACCCGGG GGAAAAAGAG
  CAAATGACCC TCGGTGCGAG CGTGTCCTTG CACCACTCTC AGGCCGCTCG CCCGCTCCCG
  CCTCCCCTGC CGTCGGAGCG GGAAGTTGCG CTGGGCTTGG AGGCCGGCCT GGAGGCGGGG
  AGACTGGGGA GGCCGGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325085178	CHEV_15_100909098	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253022905					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100976548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	within coordinates
Fignl2	fidgetin-like 2	100 bp upstream
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	within coordinates
Rr509898	regulatory region 509898	779 bp distal
Rr509899	regulatory region 509899	111 bp distal
Rr509900	regulatory region 509900	within coordinates
Rr509901	regulatory region 509901	420 bp proximal
Tssr133183	transcription start site region 133183	747 bp downstream
Tssr136514	transcription start site region 136514	287 bp upstream
Tssr136515	transcription start site region 136515	248 bp upstream
Tssr136516	transcription start site region 136516	154 bp upstream
Tssr136517	transcription start site region 136517	140 bp downstream
Tssr136518	transcription start site region 136518	215 bp downstream