rs253023491 SNP Detail

Summary

• ID
  rs253023491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48046696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGACT AGTAATTCTG
  AGCAGTACAA TGTAGGTGCT GACGCTGGTC CAACTTCTCT CACACTTAGG GGCAGGGACA
  AAAGGGCAAG ATCCAGGTCA TGTACCACAT TCCAAACGGA GACAGGATAT ATCGTGAAAA
  CGGTGGGCTC TTGAGCAAGG GGTTTTACAT CTCACACCTG CCGGATGAAA CCAAAAATCA
  Y
  GCTCCGAGCA CAGTGGCCGT TTCCCACCAA GCAGGCAAAC TTGCAGAGGG CATTCATTCC
  ATCAGGAGTG TCTGAATAAC AAAACAAGTC AGGAGCAGCG GCACACACCT CCGACTCCAG
  CCTTCTCGGA AAGCAGAGGC AGGCAGAGCT CCGTCAGATT GAGGGCACTA TAATCAACTA
  ATGAATTCTA GGCCACCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353079	MGP_WTSI_17_47872720	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253023491					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353079	MGP_WTSI_17_47872720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48046696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9270	CpG island 9270	1116 bp proximal
Pgc	progastricsin (pepsinogen C)	1293 bp downstream
Rr405329	regulatory region 405329	1044 bp upstream
Rr528107	regulatory region 528107	769 bp proximal
Rr528108	regulatory region 528108	1217 bp proximal
Rr528109	regulatory region 528109	1251 bp proximal
Rr528110	regulatory region 528110	1667 bp proximal
Tfeb	transcription factor EB	1266 bp upstream
Tssr145036	transcription start site region 145036	1987 bp downstream
Tssr145037	transcription start site region 145037	1960 bp downstream
Tssr145038	transcription start site region 145038	1941 bp downstream
Tssr145039	transcription start site region 145039	1570 bp downstream
Tssr145040	transcription start site region 145040	1536 bp downstream
Tssr145041	transcription start site region 145041	1524 bp downstream
Tssr145042	transcription start site region 145042	1473 bp downstream
Tssr145043	transcription start site region 145043	1447 bp downstream
Tssr145044	transcription start site region 145044	1434 bp downstream
Tssr145045	transcription start site region 145045	1417 bp downstream
Tssr145046	transcription start site region 145046	1366 bp downstream
Tssr145047	transcription start site region 145047	1350 bp downstream
Tssr145048	transcription start site region 145048	1330 bp downstream
Tssr145049	transcription start site region 145049	1265 bp upstream
Tssr145050	transcription start site region 145050	1354 bp upstream
Tssr145051	transcription start site region 145051	1403 bp upstream
Tssr148478	transcription start site region 148478	1961 bp upstream
Tssr148479	transcription start site region 148479	1909 bp upstream
Tssr148480	transcription start site region 148480	1443 bp upstream
Tssr148481	transcription start site region 148481	1407 bp upstream
Tssr148482	transcription start site region 148482	1290 bp upstream