rs253024389 SNP Detail

Summary

• ID
  rs253024389
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:126420453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGCAGAG GGCCCAGGTC GTAGTGGGGG
  CTGCCCGCCT TGGAGGGCAG ACCCTGCAAT GCCGTCACTT GGGGGGCAGC AAGGAGCTGG
  CCTCGGAGCC CACAGTTGAC AAACTTGCCA TGTCAAGCCT GTCGGCGCGC GCGCGTGCTC
  M
  GCAGCCCGGG CACCTAGGCT TTTGTTGTGT CGCACGCCTC CTGTCCCCAG CTCGCGCCTG
  CCTCCCGGTG TCCCAGTGCA ATCTGGGCCA CAGGACCTTT CTCCCCCGCT CCGCCTGGGG
  ACAGCAGTGC CACTTCCCTG GGAATCTCGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319961022	CHEV_1_128389293	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253024389					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126420453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nckap5	NCK-associated protein 5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr417489	regulatory region 417489			within coordinates
Rr417490	regulatory region 417490			299 bp distal
Rr417491	regulatory region 417491			16 bp proximal
Tssr13401	transcription start site region 13401			within coordinates
Tssr13402	transcription start site region 13402			79 bp downstream
Tssr13403	transcription start site region 13403			124 bp downstream
Tssr13404	transcription start site region 13404			147 bp downstream
Tssr13405	transcription start site region 13405			184 bp downstream