rs253025906 SNP Detail

Summary

• ID
  rs253025906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAAATC AGTGTCTGGG
  GACCCAGTCC TGGGCGGTAC CAAACGCTTT GCCAAACCCG AAGTGAAACA AAAAGTAGGT
  GTAAAAGTTC GCGCCTCTGT TGGAGACAGC CGCGCACCCC CTCCCTGCCT GCCGCGCACC
  CCCTCCCTGC CTGCCGCGGT ATTGGGCTGC ACCCGGGGAC TTCGGGTGGG TCCCACTCAC
  R
  GCGCCTGGAC ACTGTGTAGG GCGGGCTTCA GTTTGCCACT GGTCAAGGAG CGGAGTCCCC
  ACTGGGAGGG GCCTCCTTTG CTTCTGGGCT CACAGGATTT GAGTTCAAGG TAGCCCATAC
  TCTGGTGCTG TTCCTAGTTC CTGACCCCTA CCCCTGGGTC CCTGGGTGCG GGTCCCTGCG
  GTGCCAGAGA CACCTGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745610	MGP_WTSI_15_40487773	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253025906					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745610	MGP_WTSI_15_40487773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	1 bp distal
Gm63080	predicted gene, 63080	75 bp upstream
Rr406269	regulatory region 406269	1639 bp proximal
Rr501588	regulatory region 501588	1182 bp distal
Rr501589	regulatory region 501589	619 bp distal
Rr501590	regulatory region 501590	118 bp distal
Rr501591	regulatory region 501591	1264 bp proximal
Tssr4586	transcription start site region 4586	925 bp downstream
Tssr131170	transcription start site region 131170	1336 bp downstream
Tssr131171	transcription start site region 131171	1306 bp downstream
Tssr131172	transcription start site region 131172	1223 bp downstream
Tssr131173	transcription start site region 131173	1173 bp downstream
Tssr131174	transcription start site region 131174	1145 bp downstream
Tssr131175	transcription start site region 131175	1002 bp downstream
Tssr131176	transcription start site region 131176	961 bp downstream
Tssr131177	transcription start site region 131177	906 bp downstream
Tssr131178	transcription start site region 131178	870 bp downstream
Tssr131179	transcription start site region 131179	1959 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates