rs253026203 SNP Detail

Summary

• ID
  rs253026203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157405828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCTAA GGCCTGAAGT
  CAGGTCAGGT CCTGTGCCTG CCCCGTAGTT ACTCATCTGC AGTCAGTGGC TACCTCCTTT
  ATGGTTAGAA ACTTCTGTGG TTTGCCATAC TAAACTCATT GAACCTTGAG TACATATACA
  ACACAGGTTC CAAAGGAAGG TTGACTCTCC CCTTGGAGAT CTGGAGTGGG GGGCCTGATG
  Y
  CACTCTATTG TTCCATGTTC TAACGTCAGC CCAAATTAGA TGCCAGCTGA GTACACAAAA
  GCCAAACCAG GGAGAAAGGA GTCTGGCTAC TCTGGTCATA GCATATCCTG TGCCCATCCC
  TAAGCCAGGA GGCTACTACT GGTAACTCCA GGGCTTTCCA GATGATCTTG GTAAAACCTT
  TTTCTTCCAT CTATTATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262078	MGP_WTSI_2_157389644	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253026203					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262078	MGP_WTSI_2_157389644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157405828 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12577	CpG island 12577	1762 bp proximal
Gm56190	predicted gene, 56190	1461 bp upstream
Nnat	neuronatin	1386 bp downstream
Rr568544	regulatory region 568544	526 bp distal
Rr568545	regulatory region 568545	1624 bp proximal
Tssr721	transcription start site region 721	1451 bp upstream
Tssr21277	transcription start site region 21277	1994 bp downstream
Tssr21278	transcription start site region 21278	1961 bp downstream
Tssr21279	transcription start site region 21279	1876 bp downstream
Tssr21280	transcription start site region 21280	1764 bp downstream
Tssr21281	transcription start site region 21281	1690 bp downstream
Tssr21282	transcription start site region 21282	1617 bp downstream
Tssr21283	transcription start site region 21283	1588 bp downstream
Tssr27186	transcription start site region 27186	1894 bp upstream