rs253027363 SNP Detail

Summary

• ID
  rs253027363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124791567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCTCAT TACAGATGGT
  TGTGAGCTAC CATGTGGTTG CTGGGATTTG AACTCAGGAC CTTCGGAAGA TCAGTCAGTG
  CTCTTAACCA CTGTGCCATC TCTCCAGCTC CGAAAAACAT TAAAAAAAAA AAAGACATTT
  ATCATTAACT TCTTTTAAAT TTAAAAGATT TTTATACATG TATTCAATGA TTTTTTTTTT
  K
  TTGTTTTTGT TTTTTTTTTG TTTTTCCAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC
  TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA GATCCACCTG CCTCTGCCTC
  CCGAGTGCTG GGATTAAAGG CGTGCGCCAC CACGCCCGGC TCCTCGATGT TATTTTTATC
  ATCCAGTGCC TGTATACCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss376356888	MGP_WTSI_8_126588728	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs253027363					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376356888	MGP_WTSI_8_126588728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124791567 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	1734 bp proximal
Tssr80018	transcription start site region 80018	1949 bp upstream
Tssr80019	transcription start site region 80019	1961 bp upstream