rs253034829 SNP Detail

Summary

• ID
  rs253034829
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111832211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttacacac aactaatgga ttgaagctgg
  ggacccccgt ggttgaatca gggaaagtct agaagaagct aaggaggaag gtgatctcat
  aggaagagca gtagtttttg tttgtttgtt tggtttttgt tttttggttt tttttttttt
  W
  AAGAATAAAT ACCTTTAATA AATTCAATCA TTAGATTAAT TGTTCTGAAA GTTGTATGTG
  ATAATGGAAG GTGATTCCAG AATCATACCA GTCACTTAGA AATTACATTT CTTATTATGT
  CTCCTGTTTT GCTGAAACCT GATCTTCCAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321263761	CHEV_4_111647619	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253034829					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111832211 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	Intron
Tssr38396	transcription start site region 38396	1942 bp downstream