rs253036734 SNP Detail

Summary

• ID
  rs253036734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:79408269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAGCATCC AATCTCTCTC TACCTTTCAT
  TTTTCTTTGT TCTAGTTCTG TAAGTGTCCA CTCTCACCCT TCTGCTATAA CTACCAAACC
  TGTGCAACCT GAACCTCCTT TGTTCTGAGT CCATTTGTAT CATGTCTTAG TGGGCATGTT
  W
  tatatatata tatatatata tacacatata tatatatata cacacacaca catatatata
  catatatata tgtatgtata tatatatata tatatTTCAT AATCAGCAAA TTCAGTAGAT
  CTAGTCCCAA GGGGACCTCA CACCTCTGGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760120	CHEV_11_79330945	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253036734					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79408269 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	Intron
Evi2b	ecotropic viral integration site 2b	Intron
Nf1	neurofibromin 1	Intron
Tssr109486	transcription start site region 109486	1862 bp upstream
Tssr109487	transcription start site region 109487	1664 bp upstream
Tssr109488	transcription start site region 109488	1475 bp upstream
Tssr109489	transcription start site region 109489	1171 bp upstream
Tssr109490	transcription start site region 109490	1114 bp upstream
Tssr109491	transcription start site region 109491	1080 bp upstream
Tssr109492	transcription start site region 109492	1031 bp upstream
Tssr109493	transcription start site region 109493	1013 bp upstream
Tssr109494	transcription start site region 109494	996 bp upstream
Tssr109495	transcription start site region 109495	960 bp upstream
Tssr109496	transcription start site region 109496	939 bp upstream
Tssr109497	transcription start site region 109497	888 bp upstream
Tssr109498	transcription start site region 109498	846 bp upstream
Tssr109499	transcription start site region 109499	810 bp upstream
Tssr109500	transcription start site region 109500	779 bp upstream
Tssr109501	transcription start site region 109501	739 bp upstream
Tssr109502	transcription start site region 109502	715 bp upstream
Tssr109503	transcription start site region 109503	638 bp upstream
Tssr109504	transcription start site region 109504	1228 bp downstream
Tssr109505	transcription start site region 109505	1387 bp downstream
Tssr109506	transcription start site region 109506	1910 bp downstream