rs253037286 SNP Detail

Summary

• ID
  rs253037286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60177199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCACATA CAGACAGACA
  GATACAGTTA TATACATACA TAGGACACAC ACATGAACAT ACACACACAC CCCACACACA
  GTCAGACAGA TAGACACAGA TATAGACACA CATAGAGACA CACATATGAA CATACACACA
  CACGCCCCAC ACACAGACAG ACAGATACAG TTATAGACAT ACATAGGACA CACACATGAA
  Y
  GTACACACAG AGACACATGC ATAGTTGTCA TCTCTACACT GTCCTTCATA AGTAATCCAC
  CCATGGGGGA AATCTGATAA ATCTGTCGAT GTAGACATTG CTTTTGTTGG GCTGAGTCTT
  AGGTGCTACT GGCTGTATCT TCTTCCTGTT TTTCTTTTTT TGGCATCGTT ATCGTCTTTC
  TCCTCAGGGA TAAACCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324360202	CHEV_13_60130746	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253037286					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60177199 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	326 bp upstream
Rr284562	regulatory region 284562	3 bp proximal
Tssr120109	transcription start site region 120109	237 bp upstream
Tssr120110	transcription start site region 120110	288 bp upstream
Tssr120111	transcription start site region 120111	319 bp upstream