rs253039479 SNP Detail

Summary

• ID
  rs253039479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCCTCTT GCCTCCCTCC
  CAGCCCCCCA GCTCAGCCAA TGCTGCAGCT GCCCCCCCTC CTCCCTCTTC TCCTGAGGAA
  ACATTCAGCC TGGAGGAGAG TGAGCTCAGA GACTTAGAAG ATCCCAGGAC CTTAAAACCT
  GTTGGTAGGC CCTCCAACTC CTAAATGCCA GGATCAGGTG TAAATCTCCT AGGAGCGTCC
  Y
  CAACCACGCC CTTCCTCAGA AGTTACCTCA AAAACTTGGT GGTCTTAACT CTGAGTCCCA
  GGCCCTAGTA GCCTGCTGGA GGGAGAAGTA AGCTCCTAAA CCGGAAACTG AGTCCTCCTG
  ACACTGGCTC CCTGGACCAG TACACAGTGG GCAGAGCTCC AGGATTGTCC CTTGACGTGG
  TAATCCTTCC CTGAGTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375119776	MGP_WTSI_8_74226419	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253039479					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375119776	MGP_WTSI_8_74226419	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155164 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	731 bp upstream
Cpgi20570	CpG island 20570	684 bp distal
Gm18860	predicted gene, 18860	1685 bp downstream
Rr382258	regulatory region 382258	1173 bp downstream
Rr665157	regulatory region 665157	742 bp distal
Rr665158	regulatory region 665158	241 bp distal
Rr665159	regulatory region 665159	528 bp distal
Rr665160	regulatory region 665160	310 bp distal
Rr665161	regulatory region 665161	759 bp proximal
Rr665162	regulatory region 665162	760 bp proximal
Tssr81749	transcription start site region 81749	766 bp upstream
Tssr81750	transcription start site region 81750	736 bp upstream
Tssr81751	transcription start site region 81751	679 bp upstream
Tssr81752	transcription start site region 81752	86 bp downstream