rs253045665 SNP Detail

Summary

• ID
  rs253045665
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTAAGG ACTTCACAGC
  TTAGTCTTGA ATAGCTCTCC TGCCCCGCCC ACGAGAGGAA AGGACAAAAA AAAAACCTCG
  GAGGAAAAAA AGTAAAGCCC CCCCCAACCA CAAACAAACA AACAAAAACC CAAGCCAAAA
  AAACCCACAA CCAAACCAAA CAAACAAATC CTCCATTCAA ACAAAGAAGT CACTCTCAAA
  M
  CTGTGTGCGG TGGTATCCAG CGGCGTGGGG TTAAAGTCTG TGTTGAAGGA GATGGGATTT
  CTGTATGAGG ATTAGCCAAA GGAGGAAGGA AAGAAAGAAA GAAAGAAAGA AAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAAAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351391177	MGP_WTSI_1_130486946	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253045665					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351391177	MGP_WTSI_1_130486946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	415 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	714 bp upstream
Rr396264	regulatory region 396264	1783 bp upstream
Tssr196	transcription start site region 196	1867 bp downstream
Tssr8536	transcription start site region 8536	585 bp upstream
Tssr8537	transcription start site region 8537	908 bp upstream
Tssr8538	transcription start site region 8538	936 bp upstream
Tssr8539	transcription start site region 8539	950 bp upstream
Tssr13461	transcription start site region 13461	1907 bp upstream
Tssr13462	transcription start site region 13462	1737 bp upstream
Tssr13463	transcription start site region 13463	1637 bp upstream
Tssr13464	transcription start site region 13464	1595 bp upstream
Tssr13465	transcription start site region 13465	1582 bp upstream
Tssr13466	transcription start site region 13466	1511 bp upstream
Tssr13467	transcription start site region 13467	1469 bp upstream
Tssr13468	transcription start site region 13468	1383 bp upstream
Tssr13469	transcription start site region 13469	1329 bp upstream
Tssr13470	transcription start site region 13470	1239 bp upstream
Tssr13471	transcription start site region 13471	1167 bp upstream
Tssr13472	transcription start site region 13472	1099 bp upstream
Tssr13473	transcription start site region 13473	1084 bp upstream
Tssr13474	transcription start site region 13474	1023 bp upstream
Tssr13475	transcription start site region 13475	1002 bp upstream
Tssr13476	transcription start site region 13476	990 bp upstream
Tssr13477	transcription start site region 13477	924 bp upstream
Tssr13478	transcription start site region 13478	447 bp downstream
Tssr13479	transcription start site region 13479	476 bp downstream
Tssr13480	transcription start site region 13480	798 bp downstream
Tssr13481	transcription start site region 13481	1915 bp downstream