rs253054936 SNP Detail

Summary

• ID
  rs253054936
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87000924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCCG GGGCGCGAGC
  GGCGTTGCCC CAGGCCCGGC TTTCTGCTTC CTAGATGCTC AATTCCTTTC CTCTGTGCAA
  GGAGAACCCT GGACGAAGGC CCTCAGCGGC TGCGGGCAAG GCTGGAGTGC ACTGAGCGTC
  CAGCCGAGTG GCCTTGTCAT TCTCCATCAG TGTTCTCTTT ATTCCCGCCC TCCCATCCTT
  S
  CACTGCCCGC TAGATCGCCG CGCCTTTTTT CTTAGTTTTC TTGTTCTGTC TTCAGACTTC
  TTTTTGCATG ATCACTTTTC TTCCAGATTG ATCATCGGAC CACCAGCCCC CTTTTAAAAA
  AATACCAAGA TTAATATTAA AAAGTAAAAC ACTCCATCTG CAGTCTGCCC TTTTTCCCTC
  TGCGTAGGTA TCCGTTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772675	CHEV_11_86923600	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253054936					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87000924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			within coordinates
Gm73625	predicted gene, 73625			within coordinates
Prr11	proline rich 11			1390 bp upstream
Rr369312	regulatory region 369312			1158 bp downstream
Rr453746	regulatory region 453746			1401 bp distal
Rr453747	regulatory region 453747			576 bp distal
Rr453748	regulatory region 453748			within coordinates
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			903 bp downstream
Tssr103906	transcription start site region 103906			859 bp downstream
Tssr103907	transcription start site region 103907			824 bp downstream
Tssr103908	transcription start site region 103908			515 bp downstream
Tssr109946	transcription start site region 109946			1379 bp upstream
Tssr109947	transcription start site region 109947			1339 bp upstream
Tssr109948	transcription start site region 109948			1315 bp upstream