rs253056557 SNP Detail

Summary

• ID
  rs253056557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8061217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAGGCT CAATATAAAA
  AGAACAGTGA CAAGCATTCC ATTGTTGTCC CTCTGGGTAT GTTTTATGAA TTTATTCTCA
  ACAATGTCAA TTCGTGGGAC AGAAAATTTG AGAAAGTCAG AAACAATGCT TTACATTTTC
  TTACCACCTC CTATAATGAA GCAAAAATTA AGGTTGATAA GTACAAAACT GAAAATTCCC
  K
  TAATCAGCCC TCTGGGACCT TTCAAAATCA TGGCTACACT ATCCCAGTTG TCAACATTGA
  AGTATCTCCA TTTGCTGTAG AGACACTGGC TTCCAGCCAT GTGATCCCCA CAGCAATAAG
  CACCCCAAGT GTCACAATCC CTGGTCCTAA CATCATGGTG CCTTCATACA AGTTAGTGCT
  GCCACCCCTG GAGTTGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064711	MGP_WTSI_12_8018023	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253056557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064711	MGP_WTSI_12_8018023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8061217 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112651	transcription start site region 112651	1988 bp downstream
Tssr112652	transcription start site region 112652	1958 bp downstream
Tssr112653	transcription start site region 112653	1939 bp downstream
Tssr112654	transcription start site region 112654	1925 bp downstream
Tssr112655	transcription start site region 112655	1902 bp downstream
Tssr112656	transcription start site region 112656	1882 bp downstream
Tssr112657	transcription start site region 112657	1868 bp downstream
Tssr112658	transcription start site region 112658	1835 bp downstream
Tssr112659	transcription start site region 112659	1756 bp downstream
Tssr112660	transcription start site region 112660	1632 bp downstream
Tssr112661	transcription start site region 112661	1397 bp downstream
Tssr112662	transcription start site region 112662	1156 bp downstream
Tssr112663	transcription start site region 112663	915 bp downstream
Tssr112664	transcription start site region 112664	891 bp downstream
Tssr112665	transcription start site region 112665	736 bp downstream
Tssr112666	transcription start site region 112666	716 bp downstream
Tssr112667	transcription start site region 112667	667 bp downstream
Tssr112668	transcription start site region 112668	531 bp downstream
Tssr112669	transcription start site region 112669	444 bp downstream
Tssr112670	transcription start site region 112670	388 bp downstream
Tssr112671	transcription start site region 112671	285 bp downstream
Tssr112672	transcription start site region 112672	285 bp upstream
Tssr112673	transcription start site region 112673	328 bp upstream
Tssr112674	transcription start site region 112674	429 bp upstream
Tssr112675	transcription start site region 112675	456 bp upstream
Tssr112676	transcription start site region 112676	559 bp upstream
Tssr112677	transcription start site region 112677	709 bp upstream
Tssr112678	transcription start site region 112678	833 bp upstream
Tssr112679	transcription start site region 112679	858 bp upstream
Tssr112680	transcription start site region 112680	877 bp upstream
Tssr112681	transcription start site region 112681	924 bp upstream
Tssr112682	transcription start site region 112682	937 bp upstream
Tssr112683	transcription start site region 112683	974 bp upstream
Tssr112684	transcription start site region 112684	1018 bp upstream
Tssr112685	transcription start site region 112685	1066 bp upstream
Tssr112686	transcription start site region 112686	1114 bp upstream
Tssr112687	transcription start site region 112687	1194 bp upstream
Tssr112688	transcription start site region 112688	1295 bp upstream
Tssr112689	transcription start site region 112689	1337 bp upstream
Tssr112690	transcription start site region 112690	1362 bp upstream
Tssr112691	transcription start site region 112691	1413 bp upstream
Tssr112692	transcription start site region 112692	1449 bp upstream
Tssr112693	transcription start site region 112693	1468 bp upstream
Tssr112694	transcription start site region 112694	1606 bp upstream
Tssr112695	transcription start site region 112695	1825 bp upstream