rs253059273 SNP Detail

Summary

• ID
  rs253059273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT TCATGATGAT ACCCTTCCCG
  Y
  ATACCTAAAA GACACTATCT TGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000117	CHEV_1_140073228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253059273					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104389 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	943 bp upstream
Rr396335	regulatory region 396335	1123 bp downstream
Rr396336	regulatory region 396336	163 bp downstream
Rr419677	regulatory region 419677	1395 bp distal
Rr419678	regulatory region 419678	855 bp distal
Tssr233	transcription start site region 233	1026 bp upstream
Tssr9154	transcription start site region 9154	1014 bp downstream
Tssr9155	transcription start site region 9155	951 bp downstream
Tssr14021	transcription start site region 14021	1453 bp upstream
Tssr14022	transcription start site region 14022	1397 bp upstream
Tssr14023	transcription start site region 14023	1340 bp upstream
Tssr14024	transcription start site region 14024	1007 bp upstream
Tssr14025	transcription start site region 14025	991 bp upstream
Tssr14026	transcription start site region 14026	963 bp upstream
Tssr14027	transcription start site region 14027	947 bp upstream
Tssr14028	transcription start site region 14028	911 bp upstream
Tssr14029	transcription start site region 14029	887 bp upstream
Tssr14030	transcription start site region 14030	739 bp upstream
Tssr14031	transcription start site region 14031	715 bp upstream