rs253059859 SNP Detail

Summary

• ID
  rs253059859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACACTGT GGATAGCTGT
  GTTTGGAATG TCACTTGACT ACATCTCTCA TCCCGTGTCC TCTCAGAGAC CTGCCTGGGA
  TGGGATCTAA GGGGACATTA CTACATCTGC TGAGGGGGTC ATACCTTTGC CGACTGAAAA
  GTCACTGGTC AGTTCCTACA CCCCAGGACT TCTGTGGCCC AGCTCTGCAT ATTATCAGCG
  W
  AGGATACTAA CTAGCAGTGG CACCTAGGTG CTTGCTTGGT GGATGAGCTT CAGAGTTCAG
  GTGAGTTCAG AGGCTTCTCT AAATCCTGTT TCAACCTGAC AGGCACTGGG CCTGGGGAAG
  TCACAAAGGA GGTATCACTT CTTGCTATGT TTGGCTGGAG GAGGATCTAT GAGCCAGTGC
  TGTACAGGGA AGGCTCCGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147651	MGP_WTSI_14_55589203	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253059859					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147651	MGP_WTSI_14_55589203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207823 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	318 bp downstream
Rr492380	regulatory region 492380	1561 bp distal
Rr492381	regulatory region 492381	205 bp distal
Tssr125718	transcription start site region 125718	1683 bp downstream
Tssr125719	transcription start site region 125719	1591 bp downstream
Tssr125720	transcription start site region 125720	1566 bp downstream
Tssr125721	transcription start site region 125721	1554 bp downstream
Tssr125722	transcription start site region 125722	1106 bp downstream
Tssr125723	transcription start site region 125723	1064 bp downstream
Tssr125724	transcription start site region 125724	1024 bp downstream
Tssr125725	transcription start site region 125725	183 bp downstream
Tssr125726	transcription start site region 125726	159 bp downstream
Tssr125727	transcription start site region 125727	132 bp downstream
Tssr125728	transcription start site region 125728	667 bp upstream
Tssr125729	transcription start site region 125729	1541 bp upstream
Tssr128754	transcription start site region 128754	1936 bp upstream
Tssr128755	transcription start site region 128755	349 bp downstream
Tssr128756	transcription start site region 128756	366 bp downstream