rs253061875 SNP Detail

Summary

• ID
  rs253061875
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93730522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATACCC AGCACAGAAT
  AAATTGGATA TAGTGAGTGA CATAGCCTAT AAACCCAACA TTTGGGAGGT AGATCAAGGT
  TTATGCAAAC ATTTGAACTA ACACCCAAAG AAGTGACACA GATGCCAGAC ACATATGTAA
  AAATGTGCAA CACAAACATA TTGTTAGGAA TCATGAATTA AGATAATTTC ACCTCTTCGA
  K
  AATAGCCCAA ATCTACAATT CTAACCCTTC ATCATGCTGG TGAGGACGTG GAGCGAAGGA
  GACTGTCAGT GCAGAGGAGA AGGCAAAAAC GGTGTGGAAG ATAGCTTGGC TGTTTCTCAA
  GAAAGCACTC TACTTTTAAC ATGAAGTCAA TATTTACCCA AATGGGTTGG AAACTATGTC
  TGCACACAAA TGATTGTATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350526648	MGP_WTSI_1_95699377	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253061875					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350526648	MGP_WTSI_1_95699377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93730522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	508 bp distal
Cpgi609	CpG island 609	635 bp proximal
Dtymk	deoxythymidylate kinase	866 bp upstream
Gm57164	predicted gene, 57164	363 bp downstream
Gm70929	predicted gene, 70929	within coordinates
Ing5	inhibitor of growth family, member 5	1165 bp upstream
Rr366972	regulatory region 366972	658 bp downstream
Rr396180	regulatory region 396180	896 bp upstream
Rr416048	regulatory region 416048	1524 bp distal
Rr416049	regulatory region 416049	633 bp distal
Rr416050	regulatory region 416050	877 bp distal
Rr416051	regulatory region 416051	782 bp distal
Rr416052	regulatory region 416052	within coordinates
Rr416053	regulatory region 416053	866 bp proximal
Rr416054	regulatory region 416054	1025 bp proximal
Rr416055	regulatory region 416055	1089 bp proximal
Rr416056	regulatory region 416056	1556 bp proximal
Tssr8200	transcription start site region 8200	633 bp downstream
Tssr8201	transcription start site region 8201	1145 bp upstream
Tssr13052	transcription start site region 13052	855 bp upstream
Tssr13053	transcription start site region 13053	970 bp downstream