rs253065658 SNP Detail

Summary

• ID
  rs253065658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72220781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTCATTC CTTTGAAACA GCTTTCTCGG
  GCCATTAACT TTCATGATTT TTTTCTTAGA AATATAAAAT TAATGCAGTG AGCTCCCATC
  TAGATCGGAG GGCTTTTTTT TTTTTCTGGT CTAAAATAAC TTAACAAAAG CTTGGTATGA
  Y
  ATTGTTTCCC ACAGTAACAT GTAATCAGAC CACTTCCCCT CAAGCTCCAT ATGTGTGCCT
  CATTGCTCTT CAGACAAAGG CAGAAATACG TATGATTTGG AAGACCCACC ATCCAGCCTT
  GTCTTGAGCA TGCCCTAAGC TTTCAATCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342255	CHEV_2_72228494	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253065658					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72220781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr558965	regulatory region 558965			within coordinates
Rr558966	regulatory region 558966			247 bp distal
Rr558967	regulatory region 558967			522 bp proximal
Rr558968	regulatory region 558968			1980 bp proximal
Tssr18338	transcription start site region 18338			32 bp downstream
Tssr18339	transcription start site region 18339			282 bp upstream
Tssr18340	transcription start site region 18340			304 bp upstream
Tssr18341	transcription start site region 18341			319 bp upstream