rs253075972 SNP Detail

Summary

• ID
  rs253075972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCTTTG TTTGTTTGTT
  TTTTACTACA GGCCTTGGGA AAGGTTGACA GTTTCTCGCT AAGAGTGCAT TTTTACACTG
  GACTCACACC TACTAGTGCT GGGGTTGGGG ACGACGGCTG AGCACTGATT CGTGGTGGCC
  ACTTCTCATC TGCTTCTGGA AAAGGACAGA GAGGTTTCCC TGCCTTGAAA GCTGTTTAAC
  R
  TTGGAGTCTA CCATTGGGTT TCAATATGAG ACCAGTGATT GTAATTTTAG CGCCTCAGCA
  AGAACTCATT TTCAGTTTCT CTTCAACTTT TGCTCTGCCT CAAGATCAGA AGCTTTCCTG
  GTTTTGTCTA TTTTAAGTTC CTCTTTTGTT GCAGTTGTAG ACACTCTATG GTCCGGATTC
  AAGGCAGCAA TGGCTTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269125	CHEV_2_43594100	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253075972					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628592 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	359 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	944 bp upstream
Tssr23873	transcription start site region 23873	95 bp downstream
Tssr23874	transcription start site region 23874	436 bp downstream