rs253080331 SNP Detail

Summary

• ID
  rs253080331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55240133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCTCCA GACACAAACT
  TCTACTCAGT CCAGATCTTA TAGGCACAGC CTGAGCCGAT ATGGGTGACT TCCCCATTTC
  CTGAAGTGAA GGTGCACTTT CTCTGCCTTA TTGTCTAGTC TAGCCTCTTC CTGTCTCAGA
  CCCATAGATT GGGGGGGGGG GGGGGGAGAA AACTCCTATG CAAAGTCATA CGCATGCCTG
  Y
  CCCTTCCCTG AAGCTGACCT TTAAAAAGTT CCACCCCATT CAATGGCAGC TTTCTGAGCC
  AATTGCTCTA TTTTTTTCTT CCCCCTCTTA AATCCATTGC CTAACAATCT CTTGTTTAAC
  CTTTTGCCAA ATTCTCCACT TCTGTCAGAG GTGACTCTGA GTGAGCAGGT AACTTCTACC
  TTTGCACCTC TATCGAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402836581	MGP_WTSI_19_55326191	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	C	C	T	T	C	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253080331					SNP	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	C	C	T	T	C	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402836581	MGP_WTSI_19_55326191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55240133 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	165 bp upstream
Rr363563	regulatory region 363563	67 bp proximal
Rr363564	regulatory region 363564	1267 bp proximal
Tssr5558	transcription start site region 5558	133 bp upstream
Tssr157068	transcription start site region 157068	197 bp upstream
Tssr157069	transcription start site region 157069	224 bp upstream
Tssr157070	transcription start site region 157070	251 bp upstream
Tssr157071	transcription start site region 157071	1940 bp upstream
Tssr157072	transcription start site region 157072	1992 bp upstream