rs253081298 SNP Detail

Summary

• ID
  rs253081298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:24184134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT AAACGGCGGG GGGGGGGGGG
  S
  GGGGAGCTTA GCATGTGCAG CACTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CZECHII/EiJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss923874251	MGP_WTSI_18_24051077	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CZECHII/EiJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs253081298					SNP	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923874251	MGP_WTSI_18_24051077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:24184134 () rs orientation: forward

Symbol	Name	Function Class
Rr393422	regulatory region 393422	within coordinates
Rr405565	regulatory region 405565	637 bp downstream
Rr534883	regulatory region 534883	879 bp distal
Rr534884	regulatory region 534884	970 bp distal
Rr534885	regulatory region 534885	1039 bp proximal
Rr534886	regulatory region 534886	1869 bp proximal