rs253083448 SNP Detail

Summary

• ID
  rs253083448
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATGAGA AGGTGACACT
  GTGCATAGCC CTTCTTGCTG GAGGGAAGCC CTCCAGCCTT CTCTACTACA TACCTGATGG
  ATCCTGTATT GGGCCATCCA TCTTCTCTCT ACAATAATAA AAACTAGTGT TTTCCAAGGA
  ATGTTTTCTA GTATGCTAAT TCAGGATGAG CATCTCCAAC CCAAAACTCT AAAATCTAGA
  M
  GTCTCCAAAG TAGAGAACTT TCTGACATAA TGTGACCCAT CCAAAATTCT ACACAGTAGA
  ACCTTGTTGC ATGCACAAAA CTACTTAAAA TGCTATAGAA AACTGCCTTT AGGTATGTGT
  ATAAGATGAT CATGAAACAG ACAGAATTCA AGTTTAGACT TAAACCTCAT CTAAGATGTA
  CCATTGTGTA CATGCAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864896	CHEV_3_107043964	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253083448					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148362 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	820 bp upstream
Prok1	prokineticin 1	1339 bp upstream
Rr582947	regulatory region 582947	478 bp proximal
Rr582948	regulatory region 582948	831 bp proximal
Tssr31192	transcription start site region 31192	743 bp upstream
Tssr31193	transcription start site region 31193	814 bp upstream
Tssr31194	transcription start site region 31194	869 bp upstream