rs253084635 SNP Detail

Summary

• ID
  rs253084635
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8059313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAAACC AAGTTTACAG
  TACACTGGTC ACCTATATGT CTGACTGGTG GACTCTGACT GCTAAAAACA TAACAGACTT
  TGCAGAGCAA TATTCCATCC AAAACTGGGC TGAGAGTATA AAAGTACTGG TGGAACAAGG
  ATTCATAGTT CCTGAAATGC AAACATTTCT GTGGACCATG CCTGCTTTTG AGGTCAGTCT
  M
  CGTGCTCTCC AAGAAGGTAA CTTTCAGACC CCTGTCTTTA TAGTCCCCTT GACAGATTTG
  AGGATTCCAT CAATTCGGAT AAACTTTAAA ATGTTAAAGA ATATAAAAAT CCCATTGAGA
  TTTTCCACTC CAGAATTCAC TCTTCTCAAC ACCTTCCATG TCCATTCCTT TACAATTGAC
  TTGCTGGAAA TAAAAGCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064694	MGP_WTSI_12_8016119	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253084635					SNP	C	C	C	C	A	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064694	MGP_WTSI_12_8016119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8059313 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	601 bp downstream
Tssr112636	transcription start site region 112636	1881 bp downstream
Tssr112637	transcription start site region 112637	1801 bp downstream
Tssr112638	transcription start site region 112638	1736 bp downstream
Tssr112639	transcription start site region 112639	1494 bp downstream
Tssr112640	transcription start site region 112640	1452 bp downstream
Tssr112641	transcription start site region 112641	1400 bp downstream
Tssr112642	transcription start site region 112642	1326 bp downstream
Tssr112643	transcription start site region 112643	1237 bp downstream
Tssr112644	transcription start site region 112644	1023 bp downstream
Tssr112645	transcription start site region 112645	921 bp downstream
Tssr112646	transcription start site region 112646	892 bp downstream
Tssr112647	transcription start site region 112647	720 bp downstream
Tssr112648	transcription start site region 112648	698 bp downstream
Tssr112649	transcription start site region 112649	216 bp downstream
Tssr112650	transcription start site region 112650	136 bp downstream
Tssr112651	transcription start site region 112651	84 bp downstream
Tssr112652	transcription start site region 112652	54 bp downstream
Tssr112653	transcription start site region 112653	35 bp downstream
Tssr112654	transcription start site region 112654	21 bp downstream
Tssr112655	transcription start site region 112655	within coordinates
Tssr112656	transcription start site region 112656	10 bp upstream
Tssr112657	transcription start site region 112657	25 bp upstream
Tssr112658	transcription start site region 112658	58 bp upstream
Tssr112659	transcription start site region 112659	111 bp upstream
Tssr112660	transcription start site region 112660	263 bp upstream
Tssr112661	transcription start site region 112661	494 bp upstream
Tssr112662	transcription start site region 112662	738 bp upstream
Tssr112663	transcription start site region 112663	973 bp upstream
Tssr112664	transcription start site region 112664	998 bp upstream
Tssr112665	transcription start site region 112665	1163 bp upstream
Tssr112666	transcription start site region 112666	1172 bp upstream
Tssr112667	transcription start site region 112667	1219 bp upstream
Tssr112668	transcription start site region 112668	1357 bp upstream
Tssr112669	transcription start site region 112669	1442 bp upstream
Tssr112670	transcription start site region 112670	1495 bp upstream
Tssr112671	transcription start site region 112671	1610 bp upstream