rs253086077 SNP Detail

Summary

• ID
  rs253086077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65755309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCCATC ATTGAAAAAT
  GTCAGGGCCA AGAGCTCAAG GCAGGAACTT GGAAGCAGGA GCCAGAACAA AACACTGCTT
  GCTCCCTATG GCTTGCTCAG CTTGCCTTTT TAAAAGACAA CCTAGGACCA TGTGACCCAG
  GGATGTCACC ATCTACAATG TGCTAGACCC TCCCATTCCA ATCTTTAATC CAGAAAAATG
  W
  TCCACAGACT TCCTACAGAG CAATCTGATG GGGACATTTT CTCAATTTAA ATTCCAGCTT
  CCCAGAGGGC TCAAGCTTGT GTCAAGTTAA CAAAAAAAAC CTAACCAGGA TAACTGGTCT
  ATTAAGGACT GGTAACCCAG TCTTGTTGAA TGGAATGCAA GGCCCGGGGT CTGACTTGAA
  CAAATCTGGT AAGAGGACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809797	CHEV_6_65728319	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253086077					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65755309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	316 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	663 bp upstream
Rr631490	regulatory region 631490	173 bp proximal
Rr631491	regulatory region 631491	914 bp proximal
Tssr56854	transcription start site region 56854	669 bp upstream
Tssr61222	transcription start site region 61222	1311 bp downstream
Tssr61223	transcription start site region 61223	1364 bp downstream
Tssr61224	transcription start site region 61224	1372 bp downstream
Tssr61225	transcription start site region 61225	1389 bp downstream
Tssr61226	transcription start site region 61226	1448 bp downstream