rs253089731 SNP Detail

Summary

• ID
  rs253089731
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67375132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCGAG GATGTTGGGA
  GGGAAGGGAA CCCTAGACTC CTTCCTCCGC TGCCCGGGTT CACACTGGCA GTCTTCAGCT
  GAAGCGCAGC GGGAGAGGGA GGGGGAGGTG GCACCAGGAA TTAGCTTCAA GAACATCACC
  CACCCACTTA TCCATTCTGG GGTTCCCCTC TCTCGCGGCT GGCACCTTCT CTGTACCGCC
  W
  GGGATTGATT GGTCGGCTCT TTTTATTGGT GTCTGTATGG TTGCCTCGGC GGTAAGACCA
  CAAGGCAAAG GAGTGGGAGA GAAGTCAGAG GCAGATGGGA AATTGTTTGA TATTGTTGCT
  GCTATTGGGT GTTTTTATTG GGAACTAGAG TCACAGATGG CCGGGAGATG GAAGCAGGAA
  GGGGCATGCC CTGCTTCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380736048	MGP_WTSI_10_67002050	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253089731					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	T	T	T	T	T	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380736048	MGP_WTSI_10_67002050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67375132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1669	CpG island 1669	1373 bp distal
Cpgi1670	CpG island 1670	83 bp distal
Egr2	early growth response 2	within coordinates
Gm66196	predicted gene, 66196	1541 bp upstream
Rr369011	regulatory region 369011	1718 bp downstream
Rr401960	regulatory region 401960	1334 bp downstream
Rr433075	regulatory region 433075	1552 bp distal
Rr433076	regulatory region 433076	1422 bp distal
Rr433077	regulatory region 433077	609 bp distal
Rr433078	regulatory region 433078	within coordinates
Tssr93834	transcription start site region 93834	1425 bp downstream
Tssr93835	transcription start site region 93835	1228 bp downstream
Tssr93836	transcription start site region 93836	1107 bp downstream
Tssr93837	transcription start site region 93837	993 bp downstream
Tssr93838	transcription start site region 93838	803 bp downstream
Tssr93839	transcription start site region 93839	733 bp downstream
Tssr93840	transcription start site region 93840	39 bp downstream
Tssr93841	transcription start site region 93841	496 bp upstream
Tssr93842	transcription start site region 93842	551 bp upstream
Tssr93843	transcription start site region 93843	636 bp upstream
Tssr93844	transcription start site region 93844	672 bp upstream
Tssr93845	transcription start site region 93845	714 bp upstream
Tssr93846	transcription start site region 93846	745 bp upstream
Tssr93847	transcription start site region 93847	1445 bp upstream
Tssr97951	transcription start site region 97951	1906 bp upstream
Tssr97952	transcription start site region 97952	1591 bp upstream
Tssr97953	transcription start site region 97953	130 bp upstream
Tssr97954	transcription start site region 97954	835 bp downstream