rs253097809 SNP Detail

Summary

• ID
  rs253097809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156977433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTTGTGT TTCTCCGAAA
  GGGTGGTGTT ATTAGAAAAG CAAAACTGAG TTGTGGTTAA GAGTGGAGAC TTTAGTGAGG
  ACAAGGCCAA AGAGGGCATC TGGGGCTAAG GAAGGTTCAC CACGCTCCAG ATTAAAAAGG
  TCTTCTGGTG AACTGCAGGT ATCTTCCTGA AACAAATACG TTTTGCCAGG TTTCAAACAC
  Y
  CCAAGCTGTA AACTTGTTAA AATAAAATTA AAAACAAAAA ACAAAAAAAC CCTATAAGGC
  AACAAAGCTG CCACTCCTAT CCCAGAGCAG AAAACAAGGG ACTGGCCCAA CTGGAAAACC
  CTGAAGTGAT TGCCAGCTGG TTGTCGGACT GTCCTGTTAG ATTCCACATT CACAGTTAGT
  TGGCAGCAGA CCGCCCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356252317	MGP_WTSI_2_156961249	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253097809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356252317	MGP_WTSI_2_156961249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156977433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	55 bp distal
Rr397438	regulatory region 397438	166 bp downstream
Rr568443	regulatory region 568443	within coordinates
Samhd1	SAM domain and HD domain, 1	417 bp upstream
Tssr21224	transcription start site region 21224	1026 bp downstream
Tssr21225	transcription start site region 21225	288 bp upstream
Tssr27158	transcription start site region 27158	1539 bp upstream
Tssr27159	transcription start site region 27159	1370 bp upstream
Tssr27160	transcription start site region 27160	403 bp upstream
Tssr27161	transcription start site region 27161	379 bp upstream
Tssr27162	transcription start site region 27162	298 bp upstream