rs253098161 SNP Detail

Summary

• ID
  rs253098161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCGCTG CCTGTGGGTG
  AGCCAAGTCC GCAGGAGCAG CTGACTTGGG CATGCGAGCT TCATCTCTGG GAGAGAGCTC
  TGCAGGGTTT CCATAATAAT AATTGACCTG GGATCTCCAA GTGGCACCGA GTGCCATTGT
  TTACTAGTAA GCTTGTTAGT GTGCTCCACG CAGAGGACCT AAGCCTGCCT GGGCTGCGTA
  W
  CCCATCCGGT TGCATGGTTG CACGCAGGTT GTATATTATA GTGACTAAGC CCAGTTGGAG
  GAGGTAGGGA AGGTGAGCAG TTTTAGTCTG GAGGTTTTGC AAACCACCTC TGTCCGGAGA
  AAAGATGTGT TAAAGTTCTG GGCCGTGTAG ACAGTTGTAA GTGAAAATAG TTAAGACTCG
  TCTTCAGTGG CAAGTTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859394	CHEV_19_56897254	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253098161					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811196 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	222 bp downstream
Ccdc186	coiled-coil domain containing 186	574 bp upstream
Cpgi11092	CpG island 11092	139 bp distal
Rr406045	regulatory region 406045	346 bp downstream
Rr550140	regulatory region 550140	848 bp distal
Rr550141	regulatory region 550141	585 bp distal
Rr550142	regulatory region 550142	84 bp distal
Tssr157215	transcription start site region 157215	800 bp downstream
Tssr159886	transcription start site region 159886	677 bp upstream
Tssr159887	transcription start site region 159887	544 bp upstream