rs253100082 SNP Detail

Summary

• ID
  rs253100082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51894956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTGGCA AACTGTAGCC
  CCATAAGTGT TCCGTAGATC CAATTATCTC CGTCAACCTC CTAGAACCGG GCACAAGTAA
  GGGACCAGTA ACCACCCAGG TGACAAAACG CTCTCTTGCC GGGCGAAAGC CTCCAGGCGT
  TCATTCTGCT ATAAAATGCC CCGCTCTCCC TCATCCCCAC CCCCCACCCC CACCCCCACC
  Y
  GCAAGCACGC GGGCCTCCTA CGTCCCTCCC CCTTCCCCTT GGGTCTATCT TCCGCTTCGT
  GTCACTTTCC CTTCCGGGTC AGGACCTCAG CAATTTCCAG TCTTGCGTAC TGTGCTCGGA
  ACGCGGCAGT GCCCCGCCCT CACCCCGTTG CCAGGGCGTC CGGCTGCCCC GAGCCGGCAA
  GGTCGGCCAG GAGAGGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383367151	MGP_WTSI_11_51817631	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253100082					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383367151	MGP_WTSI_11_51817631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51894956 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	92 bp upstream
Cpgi2847	CpG island 2847	within coordinates
Rr246700	regulatory region 246700	within coordinates
Rr386068	regulatory region 386068	within coordinates
Tssr101304	transcription start site region 101304	62 bp upstream
Tssr101305	transcription start site region 101305	91 bp upstream
Tssr101306	transcription start site region 101306	184 bp upstream
Tssr101307	transcription start site region 101307	211 bp upstream